This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TCGAbiolinksGUI.
Bioconductor version: 3.8
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in https://tcgabiolinksgui.shinyapps.io/tcgabiolinks/"
Author: Tiago Chedraoui Silva <tiagochst at gmail.com>, Antonio Colaprico <antonio.colaprico at ulb.ac.be>, Catharina Olsen <colsen at ulb.ac.be>, Michele Ceccarelli, Gianluca Bontempi <gbonte at ulb.ac.be>, Benjamin P. Berman <Benjamin.Berman at cshs.org>, Houtan Noushmehr <houtana at gmail.com>
Maintainer: Tiago C. Silva <tiagochst at gmail.com>
Citation (from within R,
enter citation("TCGAbiolinksGUI")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TCGAbiolinksGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TCGAbiolinksGUI")
HTML | R Script | 1. Introduction |
HTML | R Script | 2. Data menu |
HTML | 3. Analysis menu | |
HTML | 4. Integrative analysis menu | |
HTML | 5. Cases study | |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, DNASeq, DifferentialExpression, DifferentialMethylation, GUI, GeneExpression, GeneRegulation, Genetics, MethylationArray, Network, Pathways, Sequencing, Software, StatisticalMethod |
Version | 1.8.1 |
In Bioconductor since | BioC 3.5 (R-3.4) (2 years) |
License | GPL (>= 3) |
Depends | R (>= 3.3.1), shinydashboard (>= 0.5.3), TCGAbiolinksGUI.data |
Imports | shiny (>= 0.14.1), downloader (>= 0.4), grid, DT, plotly, readr, maftools, stringr (>= 1.1.0), SummarizedExperiment, ggrepel, data.table, caret, shinyFiles (>= 0.6.2), ggplot2 (>= 2.1.0), pathview, ELMER(>= 2.0.0), clusterProfiler, parallel, TCGAbiolinks(>= 2.5.5), shinyjs (>= 0.7), colourpicker, sesame, sesameData, shinyBS (>= 0.61) |
LinkingTo | |
Suggests | testthat, dplyr, knitr, roxygen2, devtools, rvest, xml2, BiocStyle, animation, pander |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TCGAbiolinksGUI_1.8.1.tar.gz |
Windows Binary | TCGAbiolinksGUI_1.8.1.zip |
Mac OS X 10.11 (El Capitan) | TCGAbiolinksGUI_1.8.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TCGAbiolinksGUI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TCGAbiolinksGUI |
Package Short Url | http://bioconductor.org/packages/TCGAbiolinksGUI/ |
Package Downloads Report | Download Stats |
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