TTMap

DOI: 10.18129/B9.bioc.TTMap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TTMap.

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: 3.8

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TTMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")

 

PDF	R Script	Manual for the TTMap library
PDF		Reference Manual

Details

biocViews	Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL-2
Depends	rgl, colorRamps
Imports	grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
LinkingTo
Suggests	BiocStyle, airway
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TTMap_1.4.0.tar.gz
Windows Binary	TTMap_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	TTMap_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TTMap
Package Short Url	http://bioconductor.org/packages/TTMap/
Package Downloads Report	Download Stats