UNDO

DOI: 10.18129/B9.bioc.UNDO    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see UNDO.

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Bioconductor version: 3.8

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("UNDO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")

 

PDF	R Script	UNDO Usage
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.24.0
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	GPL-2
Depends	R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports	MASS, boot, nnls, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	UNDO_1.24.0.tar.gz
Windows Binary	UNDO_1.24.0.zip
Mac OS X 10.11 (El Capitan)	UNDO_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/UNDO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/UNDO
Package Short Url	http://bioconductor.org/packages/UNDO/
Package Downloads Report	Download Stats