XINA

DOI: 10.18129/B9.bioc.XINA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see XINA.

Multiplexes isobaric mass tagged-based kinetics data for network analysis

Bioconductor version: 3.8

An intuitive R package simplifies network analyses output from multiplexed high-dimensional proteomics/trascriptomics kinetics data.

Author: Lee, Lang Ho and Singh, Sasha A.

Maintainer: Lang Ho Lee <langholee at gmail.com> and Sasha A. Singh <sasingh at bwh.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("XINA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XINA")

 

HTML	R Script	xina_user_code
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, Network, Proteomics, RNASeq, Software, SystemsBiology
Version	1.0.1
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL-3
Depends	R (>= 3.5), Biobase
Imports	mclust, plyr, alluvial, ggplot2, igraph, gridExtra, tools, grDevices, graphics, utils, STRINGdb
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XINA_1.0.1.tar.gz
Windows Binary	XINA_1.0.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	XINA_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XINA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XINA
Package Short Url	http://bioconductor.org/packages/XINA/
Package Downloads Report	Download Stats