adSplit

DOI: 10.18129/B9.bioc.adSplit    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see adSplit.

Annotation-Driven Clustering

Bioconductor version: 3.8

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("adSplit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")

 

PDF	R Script	Annotation-Driven Clustering
PDF		Reference Manual

Details

biocViews	Clustering, Microarray, Software
Version	1.52.0
In Bioconductor since	BioC 1.8 (R-2.3) (13 years)
License	GPL (>= 2)
Depends	R (>= 2.1.0), methods (>= 2.1.0)
Imports	AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0)
LinkingTo
Suggests	golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)
SystemRequirements
Enhances
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	adSplit_1.52.0.tar.gz
Windows Binary	adSplit_1.52.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	adSplit_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/adSplit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/adSplit
Package Short Url	http://bioconductor.org/packages/adSplit/
Package Downloads Report	Download Stats