arrayQuality

DOI: 10.18129/B9.bioc.arrayQuality    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see arrayQuality.

Assessing array quality on spotted arrays

Bioconductor version: 3.8

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("arrayQuality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, QualityControl, Software, TwoChannel, Visualization
Version	1.60.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14 years)
License	LGPL
Depends	R (>= 2.2.0)
Imports	graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
LinkingTo
Suggests	mclust, MEEBOdata, HEEBOdata
SystemRequirements
Enhances
URL	http://arrays.ucsf.edu/
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	arrayQuality_1.60.0.tar.gz
Windows Binary	arrayQuality_1.60.0.zip
Mac OS X 10.11 (El Capitan)	arrayQuality_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/arrayQuality
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayQuality
Package Short Url	http://bioconductor.org/packages/arrayQuality/
Package Downloads Report	Download Stats