bioCancer

DOI: 10.18129/B9.bioc.bioCancer    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: 3.8

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")

 

HTML	R Script	bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version	1.10.11
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	AGPL-3 | file LICENSE
Depends	R (>= 3.4.0), radiant.data (>= 0.9.1), cgdsr (>= 1.2.6), XML (>= 3.98)
Imports	DT (>= 0.3), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, shinythemes, Biobase, geNetClassifier, AnnotationFuncs, org.Hs.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (>= 0.7), visNetwork, htmlwidgets, plyr, tibble
LinkingTo
Suggests	BiocStyle, rmarkdown, knitr, testthat (>= 0.10.0)
SystemRequirements
Enhances
URL	http://kmezhoud.github.io/bioCancer
BugReports	https://github.com/kmezhoud/bioCancer/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bioCancer_1.10.11.tar.gz
Windows Binary	bioCancer_1.10.11.zip
Mac OS X 10.11 (El Capitan)	bioCancer_1.10.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bioCancer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bioCancer
Package Short Url	http://bioconductor.org/packages/bioCancer/
Package Downloads Report	Download Stats