ccmap

DOI: 10.18129/B9.bioc.ccmap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ccmap.

Combination Connectivity Mapping

Bioconductor version: 3.8

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")

 

HTML	R Script	ccmap vignette
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	MIT + file LICENSE
Depends
Imports	AnnotationDbi(>= 1.36.2), BiocManager (>= 1.24.0), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1)
LinkingTo
Suggests	crossmeta, knitr, rmarkdown, testthat, lydata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	crossmeta
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ccmap_1.8.0.tar.gz
Windows Binary	ccmap_1.8.0.zip
Mac OS X 10.11 (El Capitan)	ccmap_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ccmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ccmap
Package Short Url	http://bioconductor.org/packages/ccmap/
Package Downloads Report	Download Stats