cghMCR

DOI: 10.18129/B9.bioc.cghMCR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see cghMCR.

Find chromosome regions showing common gains/losses

Bioconductor version: 3.8

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("cghMCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF	R Script	cghMCR findMCR
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.40.0
In Bioconductor since	BioC 1.8 (R-2.3) (13 years)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports	BiocGenerics(>= 0.1.6), stats4
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cghMCR_1.40.0.tar.gz
Windows Binary	cghMCR_1.40.0.zip
Mac OS X 10.11 (El Capitan)	cghMCR_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cghMCR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cghMCR
Package Short Url	http://bioconductor.org/packages/cghMCR/
Package Downloads Report	Download Stats