codelink

DOI: 10.18129/B9.bioc.codelink    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see codelink.

Manipulation of Codelink microarray data

Bioconductor version: 3.8

This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("codelink")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("codelink")

 

PDF	R Script	Codelink Intruction
PDF	R Script	Codelink Legacy
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Microarray, OneChannel, Preprocessing, Software
Version	1.50.0
In Bioconductor since	BioC 1.8 (R-2.3) (13 years)
License	GPL-2
Depends	R (>= 2.10), BiocGenerics(>= 0.3.2), methods, Biobase(>= 2.17.8), limma
Imports	annotate
LinkingTo
Suggests	genefilter, parallel, knitr
SystemRequirements
Enhances
URL	https://github.com/ddiez/codelink
BugReports	https://github.com/ddiez/codelink/issues
Depends On Me
Imports Me
Suggests Me	AgiMicroRna, MAQCsubset
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	codelink_1.50.0.tar.gz
Windows Binary	codelink_1.50.0.zip
Mac OS X 10.11 (El Capitan)	codelink_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/codelink
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/codelink
Package Short Url	http://bioconductor.org/packages/codelink/
Package Downloads Report	Download Stats