destiny

DOI: 10.18129/B9.bioc.destiny    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see destiny.

Creates diffusion maps

Bioconductor version: 3.8

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut] , Laleh Haghverdi [ctb], Maren Büttner [ctb] , Fabian Theis [ctb] , Carsten Marr [ctb] , Florian Büttner [ctb]

Maintainer: Philipp Angerer <philipp.angerer at helmholtz-muenchen.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("destiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("destiny")

 

PDF		Diffusion-Map-recap.pdf
PDF		Diffusion-Maps.pdf
PDF		DPT.pdf
PDF		Global-Sigma.pdf
PDF		tidyverse.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version	2.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL
Depends	R (>= 3.3.0)
Imports	methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d
LinkingTo	Rcpp, RcppEigen, grDevices
Suggests	nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
SystemRequirements	C++11
Enhances	rgl, SingleCellExperiment
URL	https://github.com/theislab/destiny
BugReports	https://github.com/theislab/destiny/issues
Depends On Me	simpleSingleCell
Imports Me	cytofkit
Suggests Me	CellTrails, monocle, scater, slingshot
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	destiny_2.12.0.tar.gz
Windows Binary	destiny_2.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	destiny_2.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/destiny
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/destiny
Package Short Url	http://bioconductor.org/packages/destiny/
Package Downloads Report	Download Stats