flowFit

DOI: 10.18129/B9.bioc.flowFit    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see flowFit.

Estimate proliferation in cell-tracking dye studies

Bioconductor version: 3.8

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowFit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowFit")

 

PDF	R Script	Fitting Functions for Flow Cytometry Data
PDF		Reference Manual

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	1.20.1
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	Artistic-2.0
Depends	R (>= 2.12.2)
Imports	flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots
LinkingTo
Suggests	flowFitExampleData
SystemRequirements
Enhances
URL
BugReports	Davide Rambaldi
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowFit_1.20.1.tar.gz
Windows Binary	flowFit_1.20.1.zip
Mac OS X 10.11 (El Capitan)	flowFit_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowFit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowFit
Package Short Url	http://bioconductor.org/packages/flowFit/
Package Downloads Report	Download Stats