focalCall

DOI: 10.18129/B9.bioc.focalCall    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see focalCall.

Detection of focal aberrations in DNA copy number data

Bioconductor version: 3.8

Detection of genomic focal aberrations in high-resolution DNA copy number data

Author: Oscar Krijgsman

Maintainer: Oscar Krijgsman <oscarkrijgsman at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("focalCall")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("focalCall")

 

PDF	R Script	focalCall
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, Preprocessing, Sequencing, Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL-2
Depends	R (>= 2.10.0), CGHcall
Imports
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/OscarKrijgsman/focalCall
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	focalCall_1.16.0.tar.gz
Windows Binary	focalCall_1.16.0.zip
Mac OS X 10.11 (El Capitan)	focalCall_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/focalCall
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/focalCall
Package Short Url	http://bioconductor.org/packages/focalCall/
Package Downloads Report	Download Stats