gaggle

DOI: 10.18129/B9.bioc.gaggle    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gaggle.

Broadcast data between R and Gaggle

Bioconductor version: 3.8

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gaggle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")

 

PDF	R Script	Gaggle Overview
PDF		Reference Manual

Details

biocViews	Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	1.50.0
In Bioconductor since	BioC 1.9 (R-2.4) (12.5 years)
License	GPL version 2 or newer
Depends	R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://gaggle.systemsbiology.net/docs/geese/r/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gaggle_1.50.0.tar.gz
Windows Binary	gaggle_1.50.0.zip
Mac OS X 10.11 (El Capitan)	gaggle_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gaggle
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gaggle
Package Short Url	http://bioconductor.org/packages/gaggle/
Package Downloads Report	Download Stats