gcrma

DOI: 10.18129/B9.bioc.gcrma    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gcrma.

Background Adjustment Using Sequence Information

Bioconductor version: 3.8

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gcrma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcrma")

 

PDF		gcrma1.2
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	2.54.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14 years)
License	LGPL
Depends	R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils
Imports	Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), XVector, Biostrings(>= 2.11.32), splines, BiocManager
LinkingTo
Suggests	affydata, tools, splines, hgu95av2cdf, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me	affyILM, affyPLM, bgx, maPredictDSC, maskBAD, simpleaffy, webbioc
Imports Me	affycoretools, affylmGUI, simpleaffy
Suggests Me	AffyExpress, ArrayTools, BiocCaseStudies, panp
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gcrma_2.54.0.tar.gz
Windows Binary	gcrma_2.54.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	gcrma_2.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gcrma
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gcrma
Package Short Url	http://bioconductor.org/packages/gcrma/
Package Downloads Report	Download Stats