genomeIntervals

DOI: 10.18129/B9.bioc.genomeIntervals    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.

Operations on genomic intervals

Bioconductor version: 3.8

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("genomeIntervals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")

 

PDF	R Script	Overview of the genomeIntervals package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Genetics, Infrastructure, Software
Version	1.38.0
In Bioconductor since	BioC 2.4 (R-2.9) (10 years)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports	GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	girafe
Imports Me	easyRNASeq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	genomeIntervals_1.38.0.tar.gz
Windows Binary	genomeIntervals_1.38.0.zip
Mac OS X 10.11 (El Capitan)	genomeIntervals_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/genomeIntervals
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/genomeIntervals
Package Short Url	http://bioconductor.org/packages/genomeIntervals/
Package Downloads Report	Download Stats