This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see h5vc.
Bioconductor version: 3.8
This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.
Author: Paul Theodor Pyl
Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>
Citation (from within R,
enter citation("h5vc")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("h5vc")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("h5vc")
HTML | R Script | Building a minimal genome browser with h5vc and shiny |
HTML | R Script | h5vc -- Tour |
Reference Manual |
biocViews | Software |
Version | 2.16.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (5.5 years) |
License | GPL (>= 3) |
Depends | grid, gridExtra, ggplot2 |
Imports | rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 1.19.38), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb |
LinkingTo | Rsamtools |
Suggests | knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | h5vcData |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | h5vc_2.16.0.tar.gz |
Windows Binary | h5vc_2.16.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | h5vc_2.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/h5vc |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/h5vc |
Package Short Url | http://bioconductor.org/packages/h5vc/ |
Package Downloads Report | Download Stats |
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