iCNV

DOI: 10.18129/B9.bioc.iCNV    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see iCNV.

Integrated Copy Number Variation detection

Bioconductor version: 3.8

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")

 

HTML	R Script	iCNV Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version	1.2.1
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL-2
Depends	R (>= 3.3.1), CODEX
Imports	fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
LinkingTo
Suggests	knitr, rmarkdown, WES.1KG.WUGSC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCNV_1.2.1.tar.gz
Windows Binary	iCNV_1.2.1.zip
Mac OS X 10.11 (El Capitan)	iCNV_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCNV
Package Short Url	http://bioconductor.org/packages/iCNV/
Package Downloads Report	Download Stats