keggorthology

DOI: 10.18129/B9.bioc.keggorthology    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see keggorthology.

graph support for KO, KEGG Orthology

Bioconductor version: 3.8

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("keggorthology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

 

PDF	R Script	keggorthology overview
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, KEGG, Pathways, Software, Visualization
Version	2.34.0
In Bioconductor since	BioC 2.6 (R-2.11) (9 years)
License	Artistic-2.0
Depends	R (>= 2.5.0), stats, graph, hgu95av2.db
Imports	AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
LinkingTo
Suggests	RBGL, ALL
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MLInterfaces
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	keggorthology_2.34.0.tar.gz
Windows Binary	keggorthology_2.34.0.zip
Mac OS X 10.11 (El Capitan)	keggorthology_2.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/keggorthology
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/keggorthology
Package Short Url	http://bioconductor.org/packages/keggorthology/
Package Downloads Report	Download Stats