mdgsa

DOI: 10.18129/B9.bioc.mdgsa    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see mdgsa.

Multi Dimensional Gene Set Analysis.

Bioconductor version: 3.8

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

Author: David Montaner <dmontaner at cipf.es>

Maintainer: David Montaner <dmontaner at cipf.es>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mdgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdgsa")

 

PDF	R Script	mdgsa_vignette
PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	GPL
Depends	R (>= 2.14)
Imports	AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/dmontaner/mdgsa http://www.dmontaner.com
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mdgsa_1.14.0.tar.gz
Windows Binary	mdgsa_1.14.0.zip
Mac OS X 10.11 (El Capitan)	mdgsa_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mdgsa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mdgsa
Package Short Url	http://bioconductor.org/packages/mdgsa/
Package Downloads Report	Download Stats