methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: 3.8

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

 

HTML	R Script	Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version	1.4.1
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.4)
Imports	methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
SystemRequirements
Enhances
URL	https://github.com/belleau/methInheritSim
BugReports	https://github.com/belleau/methInheritSim/issues
Depends On Me
Imports Me
Suggests Me	methylInheritance
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methInheritSim_1.4.1.tar.gz
Windows Binary	methInheritSim_1.4.1.zip
Mac OS X 10.11 (El Capitan)	methInheritSim_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methInheritSim
Package Short Url	http://bioconductor.org/packages/methInheritSim/
Package Downloads Report	Download Stats