miRmine

DOI: 10.18129/B9.bioc.miRmine    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see miRmine.

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment

Bioconductor version: 3.8

miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.

Author: Dusan Randjelovic [aut, cre]

Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("miRmine")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRmine")

 

HTML	R Script	miRmine
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	GPL (>= 3)
Depends	R (>= 3.4), SummarizedExperiment
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, DESeq2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRmine_1.4.0.tar.gz
Windows Binary	miRmine_1.4.0.zip
Mac OS X 10.11 (El Capitan)	miRmine_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRmine
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRmine
Package Short Url	http://bioconductor.org/packages/miRmine/
Package Downloads Report	Download Stats