mygene

DOI: 10.18129/B9.bioc.mygene    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see mygene.

Access MyGene.Info_ services

Bioconductor version: 3.8

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

Author: Adam Mark, Ryan Thompson, Cyrus Afrasiabi, Chunlei Wu

Maintainer: Adam Mark, Cyrus Afrasiabi, Chunlei Wu <cwu at scripps.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mygene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mygene")

 

PDF	R Script	Using mygene.R
PDF		Reference Manual

Details

biocViews	Annotation, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.1), GenomicFeatures
Imports	httr (>= 0.3), jsonlite (>= 0.9.7), S4Vectors, Hmisc, sqldf, plyr
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	MetaboSignal
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mygene_1.18.0.tar.gz
Windows Binary	mygene_1.18.0.zip
Mac OS X 10.11 (El Capitan)	mygene_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mygene
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mygene
Package Short Url	http://bioconductor.org/packages/mygene/
Package Downloads Report	Download Stats