myvariant

DOI: 10.18129/B9.bioc.myvariant    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see myvariant.

Accesses MyVariant.info variant query and annotation services

Bioconductor version: 3.8

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author: Adam Mark

Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("myvariant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("myvariant")

 

PDF	R Script	Using MyVariant.R
PDF		Reference Manual

Details

biocViews	Annotation, GenomicVariation, Software, VariantAnnotation
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.1), VariantAnnotation
Imports	httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, GenomeInfoDb
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	myvariant_1.12.0.tar.gz
Windows Binary	myvariant_1.12.0.zip
Mac OS X 10.11 (El Capitan)	myvariant_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/myvariant
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/myvariant
Package Short Url	http://bioconductor.org/packages/myvariant/
Package Downloads Report	Download Stats