nondetects

DOI: 10.18129/B9.bioc.nondetects    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see nondetects.

Non-detects in qPCR data

Bioconductor version: 3.8

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nondetects")

 

HTML	R Script	Title of your vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR
Version	2.12.0
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	GPL-3
Depends	R (>= 3.2), Biobase(>= 2.22.0)
Imports	limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0)
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nondetects_2.12.0.tar.gz
Windows Binary	nondetects_2.12.0.zip
Mac OS X 10.11 (El Capitan)	nondetects_2.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nondetects
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nondetects
Package Short Url	http://bioconductor.org/packages/nondetects/
Package Downloads Report	Download Stats