This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI.
Bioconductor version: 3.8
The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.
Author: Lisa M Breckels, Thomas Naake and Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>, Lisa M Breckels <lms79 at cam.ac.uk>
Citation (from within R,
enter citation("pRolocGUI")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("pRolocGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pRolocGUI")
HTML | R Script | pRolocGUI - Interactive visualisation of spatial proteomics data |
Reference Manual | ||
Video | pRoloc, pRolocdata and pRolocGUI |
biocViews | GUI, Proteomics, Software, Visualization |
Version | 1.16.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (4.5 years) |
License | GPL-2 |
Depends | methods, R (>= 3.1.0), pRoloc(>= 1.11.1), Biobase, MSnbase(>= 2.1.11) |
Imports | shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2 |
LinkingTo | |
Suggests | pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown |
SystemRequirements | |
Enhances | |
URL | http://ComputationalProteomicsUnit.github.io/pRolocGUI/ |
BugReports | https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | pRolocGUI_1.16.0.tar.gz |
Windows Binary | pRolocGUI_1.16.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | pRolocGUI_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pRolocGUI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pRolocGUI |
Package Short Url | http://bioconductor.org/packages/pRolocGUI/ |
Package Downloads Report | Download Stats |
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