plrs

DOI: 10.18129/B9.bioc.plrs    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see plrs.

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Bioconductor version: 3.8

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author: Gwenael G.R. Leday

Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("plrs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plrs")

 

PDF	R Script	plrs
PDF		Reference Manual

Details

biocViews	Regression, Software
Version	1.22.0
In Bioconductor since	BioC 2.12 (R-3.0) (6 years)
License	GPL (>=2.0)
Depends	R (>= 2.10), Biobase
Imports	BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils
LinkingTo
Suggests	mvtnorm, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plrs_1.22.0.tar.gz
Windows Binary	plrs_1.22.0.zip
Mac OS X 10.11 (El Capitan)	plrs_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plrs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plrs
Package Short Url	http://bioconductor.org/packages/plrs/
Package Downloads Report	Download Stats