polyester

DOI: 10.18129/B9.bioc.polyester    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see polyester.

Simulate RNA-seq reads

Bioconductor version: 3.8

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("polyester")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("polyester")

 

HTML	R Script	The Polyester package for simulating RNA-seq reads
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Sequencing, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
LinkingTo
Suggests	knitr, ballgown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	polyester_1.18.0.tar.gz
Windows Binary	polyester_1.18.0.zip
Mac OS X 10.11 (El Capitan)	polyester_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/polyester
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/polyester
Package Short Url	http://bioconductor.org/packages/polyester/
Package Downloads Report	Download Stats