proteoQC

DOI: 10.18129/B9.bioc.proteoQC    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control

Bioconductor version: 3.8

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("proteoQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteoQC")

 

HTML	R Script	00 proteoQC introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.18.1
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	LGPL-2
Depends	R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports	rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
LinkingTo
Suggests	RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/wenbostar/proteoQC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	proteoQC_1.18.1.tar.gz
Windows Binary	proteoQC_1.18.1.zip
Mac OS X 10.11 (El Capitan)	proteoQC_1.18.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/proteoQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/proteoQC
Package Short Url	http://bioconductor.org/packages/proteoQC/
Package Downloads Report	Download Stats