This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.
Bioconductor version: 3.8
Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.
Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
Maintainer: Ashley Sawle <ads2202cu at gmail.com>
Citation (from within R,
enter citation("qPLEXanalyzer")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("qPLEXanalyzer")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qPLEXanalyzer")
R Script | qPLEXanalyzer.pdf | |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software |
Version | 1.0.4 |
In Bioconductor since | BioC 3.8 (R-3.5) (0.5 years) |
License | GPL-2 |
Depends | R (>= 3.5), Biobase, statmod, MSnbase |
Imports | tidyr, preprocessCore, limma, ggplot2, RColorBrewer, stats, utils, Biostrings, GenomicRanges, IRanges, graphics, BiocGenerics, stringr, purrr, tibble, ggdendro, grDevices, dplyr, magrittr, assertthat |
LinkingTo | |
Suggests | UniProt.ws, knitr, qPLEXdata |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues |
Depends On Me | qPLEXdata |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | qPLEXanalyzer_1.0.4.tar.gz |
Windows Binary | qPLEXanalyzer_1.0.4.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | qPLEXanalyzer_1.0.4.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qPLEXanalyzer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qPLEXanalyzer |
Package Short Url | http://bioconductor.org/packages/qPLEXanalyzer/ |
Package Downloads Report | Download Stats |
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