This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see roar.
Bioconductor version: 3.8
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R,
enter citation("roar")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("roar")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("roar")
R Script | Identify differential APA usage from RNA-seq alignments | |
Reference Manual | ||
Text | NEWS |
biocViews | HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription |
Version | 1.18.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (5 years) |
License | GPL-3 |
Depends | R (>= 3.0.1) |
Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb |
LinkingTo | |
Suggests | RNAseqData.HNRNPC.bam.chr14, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/vodkatad/roar/ |
Depends On Me | |
Imports Me | XBSeq |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | roar_1.18.0.tar.gz |
Windows Binary | roar_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | roar_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/roar |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/roar |
Package Short Url | http://bioconductor.org/packages/roar/ |
Package Downloads Report | Download Stats |
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