seqCNA

DOI: 10.18129/B9.bioc.seqCNA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see seqCNA.

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: 3.8

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("seqCNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

 

PDF	R Script	seqCNA.pdf
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Genetics, Sequencing, Software
Version	1.28.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL-3
Depends	R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
LinkingTo
Suggests
SystemRequirements	samtools
Enhances
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Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqCNA_1.28.0.tar.gz
Windows Binary	seqCNA_1.28.0.zip
Mac OS X 10.11 (El Capitan)	seqCNA_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/seqCNA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/seqCNA
Package Short Url	http://bioconductor.org/packages/seqCNA/
Package Downloads Report	Download Stats