sigPathway

DOI: 10.18129/B9.bioc.sigPathway    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sigPathway.

Pathway Analysis

Bioconductor version: 3.8

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sigPathway")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigPathway")

 

PDF	R Script	sigPathway
PDF		Reference Manual

Details

biocViews	DifferentialExpression, MultipleComparison, Software
Version	1.50.0
In Bioconductor since	BioC 1.9 (R-2.4) (12.5 years)
License	GPL-2
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
SystemRequirements
Enhances
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me	tRanslatome
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sigPathway_1.50.0.tar.gz
Windows Binary	sigPathway_1.50.0.zip
Mac OS X 10.11 (El Capitan)	sigPathway_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sigPathway
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigPathway
Package Short Url	http://bioconductor.org/packages/sigPathway/
Package Downloads Report	Download Stats