simulatorZ

DOI: 10.18129/B9.bioc.simulatorZ    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see simulatorZ.

Simulator for Collections of Independent Genomic Data Sets

Bioconductor version: 3.8

simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSet and RangedSummarizedExperiment objects.

Author: Yuqing Zhang, Christoph Bernau, Levi Waldron

Maintainer: Yuqing Zhang <zhangyuqing.pkusms at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("simulatorZ")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simulatorZ")

 

PDF	R Script	SimulatorZ
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, Survival
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), Biobase, SummarizedExperiment, survival, CoxBoost, BiocGenerics
Imports	graphics, stats, gbm, Hmisc, GenomicRanges, methods
LinkingTo
Suggests	RUnit, BiocStyle, curatedOvarianData, parathyroidSE, superpc
SystemRequirements
Enhances
URL	https://github.com/zhangyuqing/simulatorZ
BugReports	https://github.com/zhangyuqing/simulatorZ
Depends On Me
Imports Me
Suggests Me	doppelgangR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	simulatorZ_1.16.0.tar.gz
Windows Binary	simulatorZ_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	simulatorZ_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/simulatorZ
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/simulatorZ
Package Short Url	http://bioconductor.org/packages/simulatorZ/
Package Downloads Report	Download Stats