This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see splineTimeR.
Bioconductor version: 3.8
This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.
Author: Agata Michna
Maintainer: Herbert Braselmann <braselm at helmholtz-muenchen.de>
Citation (from within R,
enter citation("splineTimeR")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("splineTimeR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splineTimeR")
R Script | splineTimeR | |
Reference Manual |
biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, NetworkEnrichment, NetworkInference, Regression, Software, TimeCourse |
Version | 1.10.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (3 years) |
License | GPL-3 |
Depends | R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines, GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs |
Imports | |
LinkingTo | |
Suggests | knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | splineTimeR_1.10.0.tar.gz |
Windows Binary | splineTimeR_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | splineTimeR_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/splineTimeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/splineTimeR |
Package Short Url | http://bioconductor.org/packages/splineTimeR/ |
Package Downloads Report | Download Stats |
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