srnadiff

DOI: 10.18129/B9.bioc.srnadiff    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see srnadiff.

Differential Expression of Small RNA-Seq

Bioconductor version: 3.8

Differential expression of small RNA-seq when reference annotation is not given.

Author: Zytnicki Matthias [aut, cre]

Maintainer: Matthias Zytnicki <matthias.zytnicki at inra.fr>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("srnadiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("srnadiff")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, DifferentialExpression, Epigenetics, GeneExpression, ImmunoOncology, Preprocessing, SmallRNA, Software, StatisticalMethod
Version	1.2.1
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL-3
Depends	R (>= 3.5)
Imports	Rcpp (>= 0.12.8), methods, utils, devtools, BiocStyle, S4Vectors, GenomeInfoDb, rtracklayer, SummarizedExperiment, IRanges, GenomicRanges, DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments, ggplot2, BiocParallel
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, testthat
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	srnadiff_1.2.1.tar.gz
Windows Binary	srnadiff_1.2.1.zip
Mac OS X 10.11 (El Capitan)	srnadiff_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/srnadiff
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/srnadiff
Package Short Url	http://bioconductor.org/packages/srnadiff/
Package Downloads Report	Download Stats