tracktables

DOI: 10.18129/B9.bioc.tracktables    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see tracktables.

Build IGV tracks and HTML reports

Bioconductor version: 3.8

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")

 

PDF	R Script	Creating IGV HTML reports with tracktables
PDF		Reference Manual
Text		NEWS

Details

biocViews	ReportWriting, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL (>= 3)
Depends	R (>= 3.0.0)
Imports	IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
LinkingTo
Suggests	knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tracktables_1.16.0.tar.gz
Windows Binary	tracktables_1.16.0.zip
Mac OS X 10.11 (El Capitan)	tracktables_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tracktables
Package Short Url	http://bioconductor.org/packages/tracktables/
Package Downloads Report	Download Stats