waveTiling

DOI: 10.18129/B9.bioc.waveTiling    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see waveTiling.

Wavelet-Based Models for Tiling Array Transcriptome Analysis

Bioconductor version: 3.8

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("waveTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("waveTiling")

 

PDF	R Script	The waveTiling package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse
Version	1.24.0
In Bioconductor since	BioC 2.11 (R-2.15) (6.5 years)
License	GPL (>=2)
Depends	oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports	methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
LinkingTo
Suggests	BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22
SystemRequirements
Enhances
URL	https://r-forge.r-project.org/projects/wavetiling/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	waveTiling_1.24.0.tar.gz
Windows Binary	waveTiling_1.24.0.zip
Mac OS X 10.11 (El Capitan)	waveTiling_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/waveTiling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/waveTiling
Package Short Url	http://bioconductor.org/packages/waveTiling/
Package Downloads Report	Download Stats