yaqcaffy

DOI: 10.18129/B9.bioc.yaqcaffy    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see yaqcaffy.

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 3.8

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("yaqcaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

 

PDF	R Script	yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.42.0
In Bioconductor since	BioC 2.2 (R-2.7) (11 years)
License	Artistic-2.0
Depends	simpleaffy(>= 2.19.3), methods
Imports	stats4
LinkingTo
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	qcmetrics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	yaqcaffy_1.42.0.tar.gz
Windows Binary	yaqcaffy_1.42.0.zip
Mac OS X 10.11 (El Capitan)	yaqcaffy_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/yaqcaffy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/yaqcaffy
Package Short Url	http://bioconductor.org/packages/yaqcaffy/
Package Downloads Report	Download Stats