grasp2db

DOI: 10.18129/B9.bioc.grasp2db    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see grasp2db.

grasp2db, sqlite wrap of GRASP 2.0

Bioconductor version: 3.8

grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("grasp2db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("grasp2db")

 

PDF	R Script	grasp2db: interface to a high density GWAS catalogue
HTML	R Script	Notes on Bioconductor's GRASP2 database curation
PDF		Reference Manual
Text		README
Text		LICENSE

Details

biocViews	AnnotationData
Version	1.1.0
License	Artistic-2.0 + file LICENSE
Depends	RSQLite, dplyr, dbplyr
Imports	methods, utils, stats, GenomeInfoDb, AnnotationHub, digest
LinkingTo
Suggests	gwascat, knitr
SystemRequirements
Enhances	AnnotationHubData
URL
Depends On Me
Imports Me
Suggests Me	AnnotationHubData
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	grasp2db_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/grasp2db/
Package Downloads Report	Download Stats