ABAData

DOI: 10.18129/B9.bioc.ABAData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ABAData.

Averaged gene expression in human brain regions from Allen Brain Atlas

Bioconductor version: 3.8

Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

Author: Steffi Grote

Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ABAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABAData")

 

HTML	R Script	ABAData: gene expression data to use with enrichment analysis package ABAEnrichment
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData
Version	1.12.0
License	GPL (>= 2)
Depends	R (>= 3.2)
Imports
LinkingTo
Suggests	BiocStyle, knitr, ABAEnrichment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	ABAEnrichment
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABAData_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/ABAData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ABAData
Package Short Url	http://bioconductor.org/packages/ABAData/
Package Downloads Report	Download Stats