DmelSGI

DOI: 10.18129/B9.bioc.DmelSGI    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DmelSGI.

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Bioconductor version: 3.8

The package contains the experimental data and documented source code of the manuscript "Fischer et al., A Map of Directional Genetic Interactions in a Metazoan Cell, eLife, 2015, in Press.". The vignette code generates all figures in the paper.

Author: Bernd Fischer

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DmelSGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DmelSGI")

 

PDF	R Script	DmelSGI
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellCulture, Drosophila_melanogaster_Data, ExperimentData, HighThroughputImagingData, HighthroughputImagingData, MicrotitrePlateAssayData, ReproducibleResearch
Version	1.14.0
License	Artistic-2.0
Depends	R (>= 3.0)
Imports	grid, TSP, limma, rhdf5, knitr, abind, gplots, igraph
LinkingTo
Suggests	BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK, RSVGTipsDevice, cgdsr, hwriter, xtable, beeswarm
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DmelSGI_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/DmelSGI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DmelSGI
Package Short Url	http://bioconductor.org/packages/DmelSGI/
Package Downloads Report	Download Stats