GeuvadisTranscriptExpr

DOI: 10.18129/B9.bioc.GeuvadisTranscriptExpr    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GeuvadisTranscriptExpr.

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Bioconductor version: 3.8

Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GeuvadisTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeuvadisTranscriptExpr")

 

PDF	R Script	Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version	1.10.0
License	GPL (>= 3)
Depends	R (>= 3.3.0)
Imports
LinkingTo
Suggests	limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	DRIMSeq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeuvadisTranscriptExpr_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeuvadisTranscriptExpr
Package Short Url	http://bioconductor.org/packages/GeuvadisTranscriptExpr/
Package Downloads Report	Download Stats