HiCDataLymphoblast

DOI: 10.18129/B9.bioc.HiCDataLymphoblast    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HiCDataLymphoblast.

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: 3.8

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("HiCDataLymphoblast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")

 

PDF	R Script	package_vignettes.pdf
PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens_Data
Version	1.18.0
License	GPL-3
Depends
Imports
LinkingTo
Suggests	GOTHiC, ShortRead
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	GOTHiC
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HiCDataLymphoblast_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HiCDataLymphoblast
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HiCDataLymphoblast
Package Short Url	http://bioconductor.org/packages/HiCDataLymphoblast/
Package Downloads Report	Download Stats