KEGGdzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGdzPathwaysGEO    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see KEGGdzPathwaysGEO.

KEGG Disease Datasets from GEO

Bioconductor version: 3.8

This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.

Author: Gaurav Bhatti, Adi L. Tarca

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("KEGGdzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, GEO, MicroarrayData
Version	1.20.0
License	GPL-2
Depends	R (>= 2.13.0)
Imports	Biobase, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	PADOG
Imports Me	GSEABenchmarkeR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGdzPathwaysGEO_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/KEGGdzPathwaysGEO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGdzPathwaysGEO
Package Short Url	http://bioconductor.org/packages/KEGGdzPathwaysGEO/
Package Downloads Report	Download Stats