LiebermanAidenHiC2009

DOI: 10.18129/B9.bioc.LiebermanAidenHiC2009    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see LiebermanAidenHiC2009.

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

Bioconductor version: 3.8

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

Author: Wolfgang Huber, Felix Klein

Maintainer: Felix Klein <fklein at embl.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("LiebermanAidenHiC2009")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiebermanAidenHiC2009")

 

PDF	R Script	Exploration of HiC data
PDF		Reference Manual

Details

biocViews	ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData
Version	0.20.0
License	LGPL
Depends	KernSmooth, IRanges
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LiebermanAidenHiC2009_0.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009
Package Short Url	http://bioconductor.org/packages/LiebermanAidenHiC2009/
Package Downloads Report	Download Stats