PCHiCdata

DOI: 10.18129/B9.bioc.PCHiCdata    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PCHiCdata.

Promoter Capture Hi-C data

Bioconductor version: 3.8

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Paula Freire-Pritchett <paula.freire-pritchett at babraham.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PCHiCdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCHiCdata")

 

HTML	R Script	PCHiCdata Vignette
PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell
Version	1.10.0
License	Artistic-2.0
Depends	R (>= 3.2), Chicago
Imports
LinkingTo
Suggests	testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	Chicago
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PCHiCdata_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/PCHiCdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PCHiCdata
Package Short Url	http://bioconductor.org/packages/PCHiCdata/
Package Downloads Report	Download Stats