SomaticCancerAlterations

DOI: 10.18129/B9.bioc.SomaticCancerAlterations    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SomaticCancerAlterations.

Somatic Cancer Alterations

Bioconductor version: 3.8

Collection of somatic cancer alteration datasets

Author: Julian Gehring (EMBL Heidelberg)

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SomaticCancerAlterations")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaticCancerAlterations")

 

HTML	R Script	SomaticCancerAlterations - HTML
PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Genome, NCI, Project1000genomes
Version	1.18.0
License	GPL-3
Depends	R (>= 3.0.0)
Imports	GenomicRanges, exomeCopy, stringr, IRanges, S4Vectors
LinkingTo
Suggests	testthat, ggbio, ggplot2, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	SomaticSignatures
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SomaticCancerAlterations_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/SomaticCancerAlterations
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SomaticCancerAlterations
Package Short Url	http://bioconductor.org/packages/SomaticCancerAlterations/
Package Downloads Report	Download Stats