This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TargetScoreData.
Bioconductor version: 3.8
Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
Citation (from within R,
enter citation("TargetScoreData")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TargetScoreData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetScoreData")
R Script | Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore | |
Reference Manual |
biocViews | ExperimentData, RNASeqData, miRNAData |
Version | 1.18.0 |
License | GPL-2 |
Depends | |
Imports | |
LinkingTo | |
Suggests | TargetScore, gplots |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | TargetScore |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TargetScoreData_1.18.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/TargetScoreData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetScoreData |
Package Short Url | http://bioconductor.org/packages/TargetScoreData/ |
Package Downloads Report | Download Stats |
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