derfinderData

DOI: 10.18129/B9.bioc.derfinderData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see derfinderData.

Processed BigWigs from BrainSpan for examples

Bioconductor version: 3.8

Processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

Author: Leonardo Collado-Torres [aut, cre], Andrew Jaffe [aut], Jeffrey Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("derfinderData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderData")

 

HTML	R Script	Introduction to derfinderData
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Homo_sapiens_Data, RNASeqData
Version	2.0.0
License	Artistic-2.0
Depends	R (>= 3.1.1)
Imports
LinkingTo
Suggests	sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6), knitrBootstrap (>= 0.9.0), RefManageR, rmarkdown (>= 0.3.3)
SystemRequirements
Enhances
URL	https://github.com/leekgroup/derfinderData
BugReports	https://github.com/leekgroup/derfinderData/issues
Depends On Me
Imports Me
Suggests Me	derfinder, derfinderPlot
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	derfinderData_2.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/derfinderData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/derfinderData
Package Short Url	http://bioconductor.org/packages/derfinderData/
Package Downloads Report	Download Stats